Package: safetyCharts 0.4.0

Jeremy Wildfire

safetyCharts: Charts for Monitoring Clinical Trial Safety

Contains chart code for monitoring clinical trial safety. Charts can be used as standalone output, but are also designed for use with the 'safetyGraphics' package, which makes it easy to load data and customize the charts using an interactive web-based interface created with Shiny.

Authors:Jeremy Wildfire [aut, cre]

safetyCharts_0.4.0.tar.gz
safetyCharts_0.4.0.zip(r-4.5)safetyCharts_0.4.0.zip(r-4.4)safetyCharts_0.4.0.zip(r-4.3)
safetyCharts_0.4.0.tgz(r-4.4-any)safetyCharts_0.4.0.tgz(r-4.3-any)
safetyCharts_0.4.0.tar.gz(r-4.5-noble)safetyCharts_0.4.0.tar.gz(r-4.4-noble)
safetyCharts_0.4.0.tgz(r-4.4-emscripten)safetyCharts_0.4.0.tgz(r-4.3-emscripten)
safetyCharts.pdf |safetyCharts.html✨
safetyCharts/json (API)
NEWS

# Install 'safetyCharts' in R:
install.packages('safetyCharts', repos = c('https://safetygraphics.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/safetygraphics/safetycharts/issues

Datasets:
  • meta_aes - Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the ae domain. One record per unique data mapping
  • meta_cm - Metadata data frame containing information about the data mapping used to configure safetyGraphics for the Concomitant medications Domain. One record per unique data mapping
  • meta_dm - Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the dm domain. One record per unique data mapping
  • meta_ecg - Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the ecg domain. One record per unique data mapping
  • meta_ex - Metadata data frame containing information about the data mapping used to configure safetyGraphics for the Exposure Domain. One record per unique data mapping
  • meta_hepExplorer - Metadata data frame containing information about the data mapping used to configure safetyGraphics for the hepExplorer Chart. One record per unique data mapping
  • meta_labs - Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the labs domain. One record per unique data mapping
  • meta_mh - Metadata data frame containing information about the data mapping used to configure safetyGraphics for the Medical History Domain. One record per unique data mapping
  • meta_vitals - Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the vital signs domain. One record per unique data mapping

On CRAN:

5.30 score 8 stars 1 packages 21 scripts 219 downloads 28 exports 86 dependencies

Last updated 2 months agofrom:65190c60a1. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 20 2024
R-4.5-winNOTENov 20 2024
R-4.5-linuxNOTENov 20 2024
R-4.4-winNOTENov 20 2024
R-4.4-macNOTENov 20 2024
R-4.3-winOKNov 20 2024
R-4.3-macOKNov 20 2024

Exports:%>%aeExplorerdemogRTF_serverdemogRTF_tabledemogRTF_uihepExplorerinit_aeExplorerinit_aeTimelinesinit_cmExplorerinit_mhExplorerinit_paneledOutlierExplorerinit_safetyOutlierExplorerinit_safetyResultsOverTimeinit_safetyShiftPlotlab_distribution_serverlab_distribution_uipaneledOutlierExplorerQT_Outlier_ExplorerQT_OutlierExplorer_serverQT_OutlierExplorer_uirender_widgetsafety_outlier_explorersafety_results_over_timesafetyOutlierExplorer_serversafetyOutlierExplorer_uistack_eventsstandardize_eventstendril_chart

Dependencies:askpassassertthatbase64encbslibcachemclicolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyrDTevaluatefansifarverfastmapfontawesomeforcatsfsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrhuxtableisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpharmaRTFpillarpkgconfigplotlyplyrpromisespurrrR6rappdirsRColorBrewerRcppreshape2rlangrmarkdownsassscalesshinysourcetoolsstringistringrsysTendriltibbletidyrtidyselecttinytexTplyrutf8vctrsviridisLitewithrxfunxml2xtableyaml

Readme and manuals

Help Manual

Help pageTopics
Make standalone aeExplorer html widgetaeExplorer
Demographics Table RTF - UIdemogRTF_server
create demographics RTF tabledemogRTF_table
Demographics Table RTF - UIdemogRTF_ui
Make standalone hepExplorer html widgethepExplorer
Initialize Settings for Adverse Event Explorer widgetinit_aeExplorer
Initialize Settings for AE Timeline widgetinit_aeTimelines
Initialize Settings for Conmeds Explorer widgetinit_cmExplorer
Initialize Settings for Medical History Explorer widgetinit_mhExplorer
Initialize Settings for Paneled Outlier Explorer widgetinit_paneledOutlierExplorer
Initialize Settings for Safety Outlier Explorer widgetinit_safetyOutlierExplorer
Initialize Settings for Safety Results Over Time widgetinit_safetyResultsOverTime
Initialize Settings for Safety Shift Plot widgetinit_safetyShiftPlot
lab distribution Module - Serverlab_distribution_server
Lab distribution Module - UIlab_distribution_ui
Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the ae domain. One record per unique data mappingmeta_aes
Metadata data frame containing information about the data mapping used to configure safetyGraphics for the Concomitant medications Domain. One record per unique data mappingmeta_cm
Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the dm domain. One record per unique data mappingmeta_dm
Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the ecg domain. One record per unique data mappingmeta_ecg
Metadata data frame containing information about the data mapping used to configure safetyGraphics for the Exposure Domain. One record per unique data mappingmeta_ex
Metadata data frame containing information about the data mapping used to configure safetyGraphics for the hepExplorer Chart. One record per unique data mappingmeta_hepExplorer
Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the labs domain. One record per unique data mappingmeta_labs
Metadata data frame containing information about the data mapping used to configure safetyGraphics for the Medical History Domain. One record per unique data mappingmeta_mh
Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the vital signs domain. One record per unique data mappingmeta_vitals
Make standalone paneledOutlierExplorer html widgetpaneledOutlierExplorer
QT Outlier ExplorerQT_Outlier_Explorer
QT Outlier Explorer Module - UIQT_OutlierExplorer_server
QT Outlier Explorer Module - UIQT_OutlierExplorer_ui
Render an htmlwidget using standard safetyGraphics workflowrender_widget
Safety Outlier Explorersafety_outlier_explorer
Safety Results Over Time plotsafety_results_over_time
Safety Outlier Explorer Module - UIsafetyOutlierExplorer_server
Safety Outlier Explorer Module - UIsafetyOutlierExplorer_ui
Combine Event Domainsstack_events
Create a standardized event data setstandardize_events
Tendril plottendril_chart