Package: safetyGraphics 2.1.1

Jeremy Wildfire

safetyGraphics: Interactive Graphics for Monitoring Clinical Trial Safety

A framework for evaluation of clinical trial safety. Users can interactively explore their data using the included 'Shiny' application.

Authors:Jeremy Wildfire [cre, aut], Becca Krouse [aut], Preston Burns [aut], Xiao Ni [aut], James Buchanan [aut], Susan Duke [aut]

safetyGraphics_2.1.1.tar.gz
safetyGraphics_2.1.1.zip(r-4.5)safetyGraphics_2.1.1.zip(r-4.4)safetyGraphics_2.1.1.zip(r-4.3)
safetyGraphics_2.1.1.tgz(r-4.4-any)safetyGraphics_2.1.1.tgz(r-4.3-any)
safetyGraphics_2.1.1.tar.gz(r-4.5-noble)safetyGraphics_2.1.1.tar.gz(r-4.4-noble)
safetyGraphics_2.1.1.tgz(r-4.4-emscripten)safetyGraphics_2.1.1.tgz(r-4.3-emscripten)
safetyGraphics.pdf |safetyGraphics.html✨
safetyGraphics/json (API)
NEWS

# Install 'safetyGraphics' in R:
install.packages('safetyGraphics', repos = c('https://safetygraphics.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/safetygraphics/safetygraphics/issues

On CRAN:

8.18 score 97 stars 111 scripts 324 downloads 49 exports 129 dependencies

Last updated 1 years agofrom:87f180e1de. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 21 2024
R-4.5-winWARNINGOct 21 2024
R-4.5-linuxWARNINGOct 21 2024
R-4.4-winWARNINGOct 21 2024
R-4.4-macWARNINGOct 21 2024
R-4.3-winWARNINGOct 21 2024
R-4.3-macWARNINGOct 21 2024

Exports:%>%app_startupchartsNavchartsNavUIchartsTabchartsTabUIdetectStandardevaluateStandardfilterTabfilterTabChecksfilterTabUIgenerateMappingListhomeTabhomeTabUIloadChartsloadChartsUIloadDataloadDataUImakeChartConfigmakeChartExportmakeChartParamsmakeChartSummarymakeMappingmakeMetamappingColumnmappingColumnUImappingDomainmappingDomainUImappingSelectmappingSelectUImappingTabmappingTabUIprepareChartprofileTabprofileTabUIsafetyGraphicsAppsafetyGraphicsInitsafetyGraphicsServersafetyGraphicsUIsettingsChartssettingsChartsUIsettingsCodesettingsCodeUIsettingsDatasettingsDataUIsettingsMappingsettingsMappingUIsettingsTabsettingsTabUI

Dependencies:askpassassertthatbackportsbase64encbitbit64bslibcachemcellrangercheckmateclassclassIntclicliprcolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledatamodsdigestdplyrDTe1071ellipsisevaluatefansifarverfastmapfontawesomeforcatsforeignfsgenericsggplot2gluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvhttrhuxtableisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallearnrlifecyclemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmeopensslpharmaRTFphosphoriconspillarpkgconfigplotlyplyrprettyunitsprogresspromisesproxypurrrR.methodsS3R.ooR.utilsR6rappdirsrclipboardRColorBrewerRcppreactablereactRreadrreadxlrematchrenvreshape2riorlangrmarkdownrprojrootsafetyChartssafetyDatasassscalesshinyshinybusyshinyjsshinyWidgetssortablesourcetoolsstringistringrsysTendriltibbletidyrtidyselecttinytextoastuiTplyrtzdbutf8vctrsviridisLitevroomwithrwritexlxfunxml2xtableyaml

Chart Configuration

Jeremy Wildfire

Rendered fromChartConfiguration.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2022-04-08
Started: 2022-04-08

Cookbook

Jeremy Wildfire

Rendered fromCookbook.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2022-04-08
Started: 2021-09-03

Intro to Shiny App

Jeremy Wildfire

Rendered fromIntro.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2022-04-08
Started: 2022-04-08

Technical FAQ

Jeremy Wildfire

Rendered fromTechnicalFAQ.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2023-02-02
Started: 2021-09-03

Readme and manuals

Help Manual

Help pageTopics
Startup code for shiny appapp_startup
Server for a navbar tabchartsNav
Adds a navbar tab that initializes the Chart Module UIchartsNavUI
Server for chart module, designed to be re-used for each chart generated.chartsTab
UI for chart module, designed to be re-used for each chart generated.chartsTabUI
Detect the data standard used for a data setdetectStandard
Evaluate a data set against a data standardevaluateStandard
Server for the filter module in datamods::filter_data_uifilterTab
Checks for whether the current data and settings support a filter tabfilterTabChecks
UI for the filter module in datamods::filter_data_uifilterTabUI
Convert mapping data.frame to a listgenerateMappingList
Server for the filter module in datamods::filter_data_uihomeTab
UI for the home modulehomeTabUI
Server for the chart loading module used in safetyGraphicsInit()loadCharts
UI for the chart loading module used in safetyGraphicsInit()loadChartsUI
Server for the data loading module used in safetyGraphicsInit()loadData
UI for the data loading module used in safetyGraphicsInit()loadDataUI
Make Chart ConfigmakeChartConfig
Make Chart ExportmakeChartExport
Make Chart ParametersmakeChartParams
html chart summarymakeChartSummary
Create data mapping based on data standards and user inputmakeMapping
Create a metadata object table for a set of chartsmakeMeta
Server that facilitates the mapping of a column data (and any associated fields)mappingColumn
UI that facilitates the mapping of a column data (and any associated fields)mappingColumnUI
Server that facilitates the mapping of a full data domainmappingDomain
UI that facilitates the mapping of a full data domainmappingDomainUI
Server that facilitates the mapping of a single data element (column or field) with a simple select UImappingSelect
UI that facilitates the mapping of a single data element (column or field) with a simple select UImappingSelectUI
Server for mapping tab covering of all data domainsmappingTab
UI for mapping tab covering of all data domainsmappingTabUI
Prepare a chart object for safetyGraphicsprepareChart
Server for the patient profile in safetyProfile::profile_serverprofileTab
UI for the profile module in safetyProfile::profile_uiprofileTabUI
Run the core safetyGraphics AppsafetyGraphicsApp
App to select charts, load data and then initialize the core safetyGraphics appsafetyGraphicsInit
Server for core safetyGraphics app including Home, Mapping, Filter, Charts and Settings modules.safetyGraphicsServer
UI for the core safetyGraphics app including Home, Mapping, Filter, Charts and Settings modules.safetyGraphicsUI
Server for settings tab showing details for the charts loaded in the appsettingsCharts
UI for settings tab showing details for the charts loaded in the appsettingsChartsUI
Server for settings tab providing code to re-start the app with current data/settingssettingsCode
UI for settings tab providing code to re-start the app with current data/settingssettingsCodeUI
Server for settings tab showing current datasettingsData
UI for settings tab showing current datasettingsDataUI
Server for settings tab showing current mappingsettingsMapping
UI for settings tab showing current mappingsettingsMappingUI
Server for the setting pagesettingsTab
UI for the settings tabsettingsTabUI